Publications
Publications from the TaMADOR consortium supported by:
- U01 DK137097 (University of Washington)
- U01 DK137113 (Pacific Northwest National Laboratories)
- U01 DK124020 (Pacific Northwest National Laboratories)
- U01 DK124019 (Cedars-Sinai Medical Center)
Publication Metrics

Last updated: March 23, 2026 — 60 publications
-
Proteomic Profiling of Human Omental and Subcutaneous Adipose Tissue in Individuals with a Broad Range of BMIbioRxiv : the preprint server for biology, 2026
-
Molecular Phenotyping With ProteomicsJAMA, 2025
-
Enrichment of extracellular vesicles using Mag-Net for the analysis of the plasma proteomeNature communications, 2025
-
A targeted LC MS/MS assay of a health surveillance panel and its application to chronic kidney diseasebioRxiv : the preprint server for biology, 2025
-
The current status of serum insulin measurements and the need for standardizationClinical chemistry and laboratory medicine, 2025
-
Evaluation of a prototype Orbitrap Astral Zoom mass spectrometer for quantitative proteomics - Beyond identification listsbioRxiv : the preprint server for biology, 2025
-
The Need for Better Validation: Evaluating Aptamer and Proximity Extension Assays for Large-Scale Clinical Proteomics StudiesClinical chemistry, 2025
-
Biomarkers, Proteoforms, and Mass Spectrometry-Based Assays for Diabetes Clinical ResearchThe Journal of clinical endocrinology and metabolism, 2025
-
Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High-Throughput PRM-MS in an Inflammatory Bowel Disease CohortAngewandte Chemie (International ed. in English), 2025Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High-Throughput PRM-MS in an Inflammatory Bowel Disease Cohort: PubMed Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High-Throughput PRM-MS in an Inflammatory Bowel Disease Cohort: DOI
-
Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass SpectrometerJournal of proteome research, 2025
-
Single-Islet Proteomics Maps Pseudo-Temporal Islet Immune Responses and Dysfunction in Stage 1 Type 1 DiabetesbioRxiv : the preprint server for biology, 2025
-
Diffusing protein binders to intrinsically disordered proteinsNature, 2025
-
A multiplex assay of leptin, resistin, and adiponectin by immunoaffinity enrichment and targeted mass spectrometryJournal of mass spectrometry and advances in the clinical lab, 2025
-
Evaluation of a Prototype Orbitrap Astral Zoom Mass Spectrometer for Quantitative Proteomics─Beyond Identification ListsJournal of proteome research, 2025
-
MRM-based LC-MS method for accurate C-peptide quantitationJournal of mass spectrometry and advances in the clinical lab, 2025
-
Characterization of Cytokine Treatment on Human Pancreatic Islets by Top-Down ProteomicsProteomics, 2025
-
Insights into insulin analog cross-reactivity: a comparative study of Siemens Atellica and LC-MS/MSEndocrine, 2025
-
An Antibody Cocktail-Based Immunoaffinity-LC-MS Method Enabled Ultra-Sensitive and Robust Quantification of Circulating Proinsulin Proteoforms and C-PeptideAnalytical chemistry, 2025An Antibody Cocktail-Based Immunoaffinity-LC-MS Method Enabled Ultra-Sensitive and Robust Quantification of Circulating Proinsulin Proteoforms and C-Peptide: PubMed An Antibody Cocktail-Based Immunoaffinity-LC-MS Method Enabled Ultra-Sensitive and Robust Quantification of Circulating Proinsulin Proteoforms and C-Peptide: DOI
-
Open-Source and FAIR Research Software for ProteomicsJournal of proteome research, 2025
-
Post-Translationally Modified Proteoforms as Biomarkers: From Discovery to Clinical UseClinical chemistry, 2025
-
Characterization of cytokine treatment on human pancreatic islets by top-down proteomicsbioRxiv : the preprint server for biology, 2025
-
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteomebioRxiv : the preprint server for biology, 2024
-
Proteomics of the heartPhysiological reviews, 2024
-
Interlaboratory Comparison of Antibody-Free LC-MS/MS Measurements of C-peptide and InsulinClinical chemistry, 2024
-
High Doses of Exogenous Glucagon Stimulate Insulin Secretion and Reduce Insulin Clearance in Healthy HumansDiabetes, 2024
-
An inflection point in high-throughput proteomics with Orbitrap Astral: analysis of biofluids, cells, and tissuesbioRxiv : the preprint server for biology, 2024
-
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?Journal of proteome research, 2024
-
Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass SpectrometerbioRxiv : the preprint server for biology, 2024
-
A Framework for Quality Control in Quantitative ProteomicsJournal of proteome research, 2024
-
A Trapping-Micro-LC-FAIMS/dCV-MS Strategy for Ultrasensitive and Robust Targeted Quantification of Protein Drugs and BiomarkersAnalytical chemistry, 2024
-
Exploring new frontiers in type 1 diabetes through advanced mass-spectrometry-based molecular measurementsTrends in molecular medicine, 2024
-
De novo design of high-affinity binders of bioactive helical peptidesNature, 2024
-
Hybrid Quadrupole Mass Filter-Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted ProteomicsJournal of proteome research, 2024
-
An Inflection Point in High-Throughput Proteomics with Orbitrap Astral: Analysis of Biofluids, Cells, and TissuesJournal of proteome research, 2024
-
Hybrid Quadrupole Mass Filter - Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted ProteomicsbioRxiv : the preprint server for biology, 2024
-
A Proteomics Pipeline for Generating Clinical Grade Biomarker Candidates from Data-Independent Acquisition Mass Spectrometry (DIA-MS) DiscoveryAngewandte Chemie (International ed. in English), 2024A Proteomics Pipeline for Generating Clinical Grade Biomarker Candidates from Data-Independent Acquisition Mass Spectrometry (DIA-MS) Discovery: PubMed A Proteomics Pipeline for Generating Clinical Grade Biomarker Candidates from Data-Independent Acquisition Mass Spectrometry (DIA-MS) Discovery: DOI
-
Development of highly multiplex targeted proteomics assays in biofluids using the Stellar mass spectrometerbioRxiv : the preprint server for biology, 2024
-
Deletion of Carboxypeptidase E in β-Cells Disrupts Proinsulin Processing but Does Not Lead to Spontaneous Development of Diabetes in MiceDiabetes, 2023
-
Transcriptome and secretome profiling of sensory neurons reveals sex differences in pathways relevant to insulin sensing and insulin secretionFASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2023
-
High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample ProcessingJournal of proteome research, 2023
-
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling PathwaysMolecules (Basel, Switzerland), 2023
-
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA IsoformsJournal of proteome research, 2023
-
Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteinsCell metabolism, 2023
-
Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunityCell reports. Medicine, 2023
-
Top-Down Proteomics of Mouse Islets With Beta Cell CPE Deletion Reveals Molecular Details in Prohormone ProcessingEndocrinology, 2023
-
Highly Accurate and Robust Absolute Quantification of Target Proteins in Formalin-Fixed Paraffin-Embedded (FFPE) Tissues by LC-MSAnalytical chemistry, 2023
-
Species-Deconvolved Proteomics for In Situ Investigation of Tumor-Stroma Interactions after Treatment of Pancreatic Cancer Patient-Derived Xenografts with Combined Gemcitabine and PaclitaxelJournal of proteome research, 2023Species-Deconvolved Proteomics for In Situ Investigation of Tumor-Stroma Interactions after Treatment of Pancreatic Cancer Patient-Derived Xenografts with Combined Gemcitabine and Paclitaxel: PubMed Species-Deconvolved Proteomics for In Situ Investigation of Tumor-Stroma Interactions after Treatment of Pancreatic Cancer Patient-Derived Xenografts with Combined Gemcitabine and Paclitaxel: DOI
-
Mass spectrometry-based targeted proteomics for analysis of protein mutationsMass spectrometry reviews, 2023
-
High-quality and robust protein quantification in large clinical/pharmaceutical cohorts with IonStar proteomics investigationNature protocols, 2023
-
Highly Reproducible Quantitative Proteomics Analysis of Pancreatic Cancer Cells Reveals Proteome-Level Effects of a Novel Combination Drug Therapy That Induces Cancer Cell Death via Metabolic Remodeling and Activation of the Extrinsic Apoptosis PathwayJournal of proteome research, 2023Highly Reproducible Quantitative Proteomics Analysis of Pancreatic Cancer Cells Reveals Proteome-Level Effects of a Novel Combination Drug Therapy That Induces Cancer Cell Death via Metabolic Remodeling and Activation of the Extrinsic Apoptosis Pathway: PubMed Highly Reproducible Quantitative Proteomics Analysis of Pancreatic Cancer Cells Reveals Proteome-Level Effects of a Novel Combination Drug Therapy That Induces Cancer Cell Death via Metabolic Remodeling and Activation of the Extrinsic Apoptosis Pathway: DOI
-
Apolipoprotein C3 and circulating mediators of preadipocyte proliferation in states of lipodystrophyMolecular metabolism, 2022
-
In-depth mapping of protein localizations in whole tissue by micro-scaffold assisted spatial proteomics (MASP)Nature communications, 2022
-
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validationNature protocols, 2021
-
A Pilot Study of Urine Proteomics in COVID-19-Associated Acute Kidney InjuryKidney international reports, 2021
-
Ultra-High-Resolution IonStar Strategy Enhancing Accuracy and Precision of MS1-Based Proteomics and an Extensive Comparison with State-of-the-Art SWATH-MS in Large-Cohort QuantificationAnalytical chemistry, 2021Ultra-High-Resolution IonStar Strategy Enhancing Accuracy and Precision of MS1-Based Proteomics and an Extensive Comparison with State-of-the-Art SWATH-MS in Large-Cohort Quantification: PubMed Ultra-High-Resolution IonStar Strategy Enhancing Accuracy and Precision of MS1-Based Proteomics and an Extensive Comparison with State-of-the-Art SWATH-MS in Large-Cohort Quantification: DOI
-
Parallel, High-Quality Proteomic and Targeted Metabolomic Quantification Using Laser Capture Microdissected TissuesAnalytical chemistry, 2021
-
Serial Innovation to Bring Transformative Precision Medicines to People With Serious Diseases: A Conversation With Jeffrey Leiden, MD, PhDCirculation, 2020
-
PINE: An Automation Tool to Extract and Visualize Protein-Centric Functional NetworksJournal of the American Society for Mass Spectrometry, 2020
-
Precision Medicine: Role of Proteomics in Changing Clinical Management and CareJournal of proteome research, 2019
-
Precision MedicineCirculation, 2018
This list is updated periodically. For the most current list, please also see PubMed and individual research group pages.